PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0070s0028.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 422aa    MW: 47982.9 Da    PI: 7.5353
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0070s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-11358383126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +ktelC+++ + G C+y ++C+FaHg
  Mapoly0070s0028.1.p 358 FKTELCKNWEERGGCPYTANCRFAHG 383
                          79***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-16355390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432357385IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-9357389IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7357384IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9358383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6391420IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-8391420IPR000571Zinc finger, CCCH-type
SMARTSM0035640395421IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.859395421IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MNHVSKSNSP SMQTCVDSSL NSYLAVEVSN VAGEELKEFV GDIESVGKGK QEGLLLQPEF  60
LSQVPQDNAC EHVLFEEEKH ARKLQVEELY FDNTRDDLRQ RWQVLSQNQD LLWHKKRVFQ  120
LFGRVMMLLE EKLSCAKEVE KLSKTLSEEK CLDQSSLTSE TAAFRHDSSP SLRALNFDIM  180
HKRRSPSPTH GFSQEIRKGT FNLQLSDSSP GYISLTTSTS SGSPFLQSDR GGVARGPAFN  240
SVGEPYFPCE WGMPSKQISS KVATMSLPLS VQESRIKDPP YPIFFEREAS HSFRKFTSSE  300
GSQVPFDEFK GSSNSSSTQH SSPDYGFPIR PPSFYSEDYE NIKLRRASRK TISQQGQFKT  360
ELCKNWEERG GCPYTANCRF AHGIEELRPV VRHPLYRTQI CRMLVEGRDC IYGHRCHFRH  420
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A2e-15352420472Tristetraproline
1rgo_A2e-15357420366Butyrate response factor 2
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-30C3H family protein